StringTie assembles aligned RNA-Seq reads into transcripts that represent splice variants in RNA-Seq samples.
StringTie is available on the Owens Cluster. The versions currently available at OSC are:
Version | Owens |
---|---|
1.3.3b | X* |
You can use module spider stringtie
to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
StringTie is available to all OSC users. If you have any questions, please contact OSC Help.
https://ccb.jhu.edu/software/stringtie/, Open source
To configure your enviorment for use of StringTie, use command module load stringtie
. This will load the default version.