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Bioperl

Introduction

Bioperl offers a set of perl modules which can be used for sequence manipulation. Knowledge of PERL programming is required.

Version

Version 1.5.1 is currently available at OSC.

Availability

Bioperl is available on the Glenn Cluster.

Usage

This is an example of how to use bioperl and access the sequence package on the Glenn Cluster.

use lib '/usr/local/biosoftw/bioperl-1.5.1'
use Bio::Seq;

Examples:
Examples are located at
/usr/local/biosoftw/src/bioperl-1.5.1/doc/howto/examples/

Documentation

Documentation can be found on-line at: http://bioperl.org/ or in the directory /usr/local/biosoftw/src/bioperl-1.5.1/doc/howto