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Bioperl

Introduction

Bioperl offers a set of perl modules which can be used for sequence manipulation. Knowledge of PERL programming is required.

Version

Version 1.5 is currently available at OSC.

Availability

Bioperl is available on the Pentium 4 Cluster.

Usage

This is an example of how to use bioperl and access the sequence package on Apple Cluster. Several additional packages are included in the installation.

use lib '/biosoftw/apple-10.4/bioperl-1.5.0'
use Bio::Seq;

Examples:
Examples are located at /biosoftw/src/bioperl-1.5.0/bioperl-1.5.0/doc/howto/examples.

Documentation

Documentation can be found on-line at: http://bioperl.org/ or in the directory /biosoftw/src/bioperl-1.5.0/bioperl-1.5.0/doc/howto