Software at OSC |
GROMACSIntroductionGROMACS is a versatile package to perform molecular dynamics. It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but it has also been used on non-biological systems such as polymers. VersionVersion 3.2.1 is currently available at OSC. AvailabilityGROMACS is available on the Intel P4 Linux Cluster, the IBM Opteron Cluster and the Intel Itanium-2 Linux Cluster. UsageTo use the GROMACS commands, first load the gromacs module into your shell environment: module load gromacsgrompp_d -np 4 ... mpiexec mdrun_d -np 4 -v ... Documentation |