Software at OSC |
Bioinformatics Software available at OSCAmber- a molecular simulation program bioperl - offers a set of perl modules which can be used for sequence manipulation BLAT - a sequence analysis tool which performs rapid mRNA/DNA and cross-species protein alignments CERF* - Collaborative Electronic Research Framework (CERF) is a network storage system that offers workgroup collaboration, access control, version control, and digital signatures in a multi-user setting. ClustalW - a general purpose multiple sequence alignment program for DNA or proteins EMBOSS - a sequence analysis package specially developed for the needs of the molecular biology user community ExtractProp* - a portable application for extracting properties from computational biology applications Galaxy - a program for dynamic transitive closure analysis HMMER - profile HMMs for protein sequence analysis Mascot Search Engine - a powerful search engine that uses mass spectrometry data to identify proteins from primary sequence databases. Mitoprot - a software program permitting the study and prediction of mitochondrion-related proteins MrBayes - a program for the Bayesian estimation of phylogeny Multicoil - a program for predicting two- and three-stranded coiled-coils NAMD - a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems NCBI Toolkit - a collection of utilities developed for the production and distribution of GenBank, Entrez, BLAST, and related services by the National Center for Biotechnology Information Ohio BioSciences Library* - a suite of high-performance bioinformatics applications designed for use on large memory SMP and cluster computing systems alike Partek Pro* - Partek Pro is an integrated, scalable software environment capable of analysis and transformation of millions of records or millions of variables PCBL (Portable Cray Bioinformatics Library) - a portable implementation of the Cray Bioinformatics Library interface. Phylip - a package of programs for inferring phylogenies Predotar - a program for predicting sequence properties Stata - a complete, integrated statistical package that provides everything needed for data analysis, data management, and graphics TimeLogic DeCypher - a suite of applications for accelerating intensive bioinformatics algorithms * Indicates software available through OSC's Statewide Software License Distribution Availability by machine
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