Jmol is a simple molecular visualization program. It can read many file formats and can write various formats. Animations of normal modes and simulations are implemented. Jmol is an OpenScience Java application.
Jmol is available to all OSC users without restirction.
The following versions of Jmol are available on OSC systems:
Jmol is best executed locally. Thus, we recommend downloading the latest version from http://jmol.sourceforge.net/download/. The installation process is trivial.
To setup Glenn for use of Jmol, run the following command:
module load jmol
To execute Jmol, simply run the jmol binary with an optional input file on the command line:
Jmol should be executed interactively.