bam2fastq is used to extract raw sequences (with qualities) from programs like SAMtools, Picard, and Bamtools.
The following versions of bam2fastq are available on OSC clusters:
Version | Owens | Pitzer |
---|---|---|
1.1.0 | X* | X* |
You can use module spider bam2fastq
to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
bam2fastq is available to all OSC users. If you have any questions, please contact OSC Help.
Genomic Services Lab at Hudson Alpha, Open source
module load bam2fastq
. The default version will be loaded. To select a particular bam2fastq version, use module load bam2fastq/version
. For example, use module load bam2fastq/1.1.0
to load bam2fastq 1.1.0.module load bam2fastq
. The default version will be loaded. To select a particular bam2fastq version, use module load bam2fastq/version
. For example, use module load bam2fastq/1.1.0
to load bam2fastq 1.1.0.