Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.
The following versions of Trimmomatic are available on OSC clusters:
| Version | Ascend |
|---|---|
| 0.38 | X |
You can use module spider trimmomatic to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Trimmomatic is available to all OSC users. If you have any questions, please contact OSC Help.
http://www.usadellab.org/cms/?page=trimmomatic, Open source
module load trimmomatic/version. For example, use module load trimmomatic/0.38 to load Trimmomatic 0.38.This software provides a wrapper script around a Java executable .jar file. To see the usage, use the following command: trimmomatic. The script uses the variables $JAVA_ARGS and $JAVA_OPTS. You can set these as environment variables to modify the java arguments, either before invoking the trimmomatic script or on the same line: JAVA_ARGS="some_args" trimmomatic