MIRA

MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.

Availability and Restrictions

Versions

The following versions of MIRA are available on OSC clusters:

Version Oakley Owens
4.0.2 X* X*
* Current default version

You can use module spider mira to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

MIRA is available to all OSC users without restriction.

Usage

Usage on Oakley

Set-up

To configure your environment for use of MIRA, run the following command: module load mira. The default version will be loaded. To select a particular MIRA version, use module load mira/version. For example, use  module load mira/4.0.2 to load MIRA 4.0.2.

Usage on Owens

Set-up

To configure your environment for use of MIRA, run the following command: module load mira. The default version will be loaded. To select a particular MIRA version, use module load mira/version. For example, use module load mira/4.0.2 to load MIRA 4.0.2.

Further Reading

Service: 
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