BamTools

BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.

Availability and Restrictions

Versions

The following versions of BamTools are available on OSC clusters:

Version Oakley Owens
2.2.2 X  X*
2.4.0  X*  
* Current default version

You can use module spider bamtools to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

BamTools is available to all OSC users without restriction.

Usage

Usage on Oakley

Set-up

To configure your environment for use of BamTools, run the following command: module load bamtools. The default version will be loaded. To select a particular BamTools version, use module load bamtools/version. For example, use  module load bamtools/2.2.2 to load BamTools 2.2.2.

Usage on Owens

Set-up

To configure your environment for use of BamTools, run the following command: module load bamtools. The default version will be loaded. To select a particular BamTools version, use module load bamtools/version. For example, use module load bamtools/2.2.2 to load BamTools 2.2.2.

Further Reading

Service: 
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