HISAT2

HISAT2 is a graph-based alignment program that maps DNA and RNA sequencing reads to a population of human genomes.

Availability and Restrictions

Versions

HISAT2 is available on the Pitzer Cluster. The versions currently available at OSC are:

Version	Pitzer
2.1.0	X*

* Current Default Version

You can use module spider hisat2 to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

HISAT2 is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

https://ccb.jhu.edu/software/hisat2, Open source

Usage

Usage on Pitzer

Set-up

To configure your enviorment for use of HISAT2, use command module load hisat2. This will load the default version.