Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.
The following versions of Trinity are available on OSC clusters:
| Version | Cardinal |
|---|---|
| 2.15.2 | X |
You can use module spider trinityrnaseq to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Trinity is available to all OSC users. If you have any questions, please contact OSC Help.
Broad Institute and the Hebrew University of Jerusalem, Open source
module load trinityrnaseq/version. For example, use module load trinityrnaseq/2.15.2 to load Trinity 2.15.2.TRINITY_IMG environment variable contains the container image file path. If you would like to run other Trinity or other Trinity-supported analyses, you can run them by refferring to their path in the container. For example, with TrinityStats.pl:apptainer exec -e $TRINITY_IMG /usr/local/bin/util/TrinityStats.pl
Trinity --version
For more information about Apptainer/Singularity usages, please read the OSC Apptainer/Singularity page.