BioPerl

BioPerl offers a set of perl modules which can be used for sequence manipulation. Knowledge of PERL programming is required.

Availability & Restrictions

Versions

The following versions of BioPerl are available:

Version Oakley
1.6.1  X*
* Current Default Version

You can use module spider bioperl to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

BioPerl is available without restriction to all OSC users.

Publisher/Vender/Repository and License Type

The BioPerl Project, Open source

Usage

Using BioPerl

This is an example of how to use bioperl and access the sequence package on the Oakley Cluster.

use lib '/usr/local/bioperl/1.6.1/lib/perl5/'
use Bio::Seq;

Further Reading

See Also

Supercomputer: 
Service: 
Fields of Science: