BioPerl offers a set of perl modules which can be used for sequence manipulation. Knowledge of PERL programming is required.
Availability & Restrictions
The following versions of BioPerl are available:
You can use
module spider bioperl to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
BioPerl is available without restriction to all OSC users.
Publisher/Vender/Repository and License Type
The BioPerl Project, Open source
This is an example of how to use bioperl and access the sequence package on the Oakley Cluster.
use lib '/usr/local/bioperl/1.6.1/lib/perl5/' use Bio::Seq;