BioPerl offers a set of perl modules which can be used for sequence manipulation. Knowledge of PERL programming is required.
Availability & Restrictions
The following versions of BioPerl are available:
You can use
module spider bioperl to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
BioPerl is available without restriction to all OSC users.
This is an example of how to use bioperl and access the sequence package on the Oakley Cluster.
use lib '/usr/local/bioperl/1.6.1/lib/perl5/' use Bio::Seq;