eXpress

eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences.

Availability and Restrictions

Versions

The following versions of eXpress are available on OSC clusters:

Version Oakley Owens
1.5.1 X* X*
* Current default version

You can use  module spider express to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

eXpress is available to all OSC users without restriction.

Publisher/Vendor/Repository and License Type

Adam Roberts and Lior Pachter, Open source

Usage

Usage on Oakley

Set-up

To configure your environment for use of eXpress, run the following command: module load express. The default version will be loaded. To select a particular eXpress version, use module load express/version. For example, use module load express/1.5.1 to load eXpress 1.5.1.

Usage on Owens

Set-up

To configure your environment for use of eXpress, run the following command: module load express. The default version will be loaded. To select a particular eXpress version, use module load express/version. For example, use module load express/1.5.1 to load eXpress 1.5.1.

Further Reading

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