eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences.
Availability and Restrictions
Versions
The following versions of eXpress are available on OSC clusters:
| Version | Oakley | Owens |
|---|---|---|
| 1.5.1 | X* | X* |
* Current default version
You can use module spider express to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
eXpress is available to all OSC users without restriction.
Publisher/Vendor/Repository and License Type
Adam Roberts and Lior Pachter, Open source
Usage
Usage on Oakley
Set-up
To configure your environment for use of eXpress, run the following command:
module load express. The default version will be loaded. To select a particular eXpress version, use module load express/version. For example, use module load express/1.5.1 to load eXpress 1.5.1.Usage on Owens
Set-up
To configure your environment for use of eXpress, run the following command:
module load express. The default version will be loaded. To select a particular eXpress version, use module load express/version. For example, use module load express/1.5.1 to load eXpress 1.5.1.Further Reading
Service:
Fields of Science: