eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences.
Availability and Restrictions
Versions
The following versions of eXpress are available on OSC clusters:
| Version | Owens |
|---|---|
| 1.5.1 | X* |
* Current default version
You can use module spider express to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
eXpress is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Adam Roberts and Lior Pachter, Open source
Usage
Usage on Owens
Set-up
To configure your environment for use of eXpress, run the following command:
module load express. The default version will be loaded. To select a particular eXpress version, use module load express/version. For example, use module load express/1.5.1 to load eXpress 1.5.1.Further Reading
Supercomputer:
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