StringTie

StringTie assembles aligned RNA-Seq reads into transcripts that represent splice variants in RNA-Seq samples.

Availability and Restrictions

Versions

StringTie is available on the Owens Cluster. The versions currently available at OSC are:

VERSION OWENS
1.3.3b X*
* Current Default Version

You can use module spider stringtieto view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

StringTie is available without restriction to all OSC users.

Usage

Usage on Owens

Set-up

To configure your enviorment for use of StringTie, use command module load stringtie. This will load the default version.

Further Reading

Fields of Science: