StringTie

StringTie assembles aligned RNA-Seq reads into transcripts that represent splice variants in RNA-Seq samples.

Availability and Restrictions

Versions

StringTie is available on the Owens Cluster. The versions currently available at OSC are:

VERSION OWENS
1.3.3b X*
* Current Default Version

You can use module spider stringtieto view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

StringTie is available without restriction to all OSC users.

Publisher/Vendor/Repository and License Type

https://ccb.jhu.edu/software/stringtie/, Open source

Usage

Usage on Owens

Set-up

To configure your enviorment for use of StringTie, use command module load stringtie. This will load the default version.

Further Reading

Supercomputer: 
Fields of Science: