Known issues

Unresolved known issues

Known issue with an Unresolved Resolution state is an active problem under investigation; a temporary workaround may be available.

Resolved known issues

A known issue with a Resolved (workaround) Resolution state is an ongoing problem; a permanent workaround is available which may include using different software or hardware.

A known issue with Resolved Resolution state has been corrected.

Known Issues

Title Category Resolution Description Posted Updatedsort ascending
Mathematica fails to launch Pitzer, Software Resolved
(workaround)

Mathematica was not launching due to firewall issues. We point our mathematica instances at an external Mathematica server, which have stopped working. The issue is now resolved as of Sep... Read more

5 months 15 hours ago 4 months 2 weeks ago
Login Problems with OnDemand and Web-Based Services login Resolved

We are currently experiencing issues with Keycloak IdP that provides authentication for OnDemand and most other web-based services. This may cause login difficulties when accessing these... Read more

4 months 3 weeks ago 4 months 3 weeks ago
ouollama fails to login Login Problems, Software, Web Services Resolved

Initially when going to the ouollama page it may display a broken image and hang. If this happens please refresh your browser by hitting the refresh button. Re-entering the URL may not... Read more

4 months 3 weeks ago 4 months 3 weeks ago
Some MKL environment variables have incorrect paths Ascend, Cardinal, Pitzer, Software Resolved

MKL module files define some helper environment variables with incorrect paths.  This can yield link time errors.  All three clusters are affected.  We are working to correct the module... Read more

8 months 2 days ago 6 months 10 hours ago
Poor performance with hybrid MPI+OpenMPI jobs and more than 4 MPI Tasks on multiple nodes Software Resolved
(workaround)

RELION versions prior to 5 may exhibit suboptimal performance in hybrid MPI+OpenMP jobs when the number of MPI tasks exceeds four across multiple nodes.

Workaround... Read more

6 months 4 days ago 6 months 4 days ago
Docker container runtime error on desktop due to DBUS session Software Resolved
(workaround)

When running a container using the podman or docker command on a desktop system, you may encounter an error like the following:

Error: OCI... Read more          
6 months 2 weeks ago 6 months 2 weeks ago
Podman storage error due to outdated configuration file Software Resolved
(workaround)

If you experience a storage error such as:

 write /var/tmp/storage388772891/1: no space left on device.

you may have an outdated ~/.... Read more

6 months 2 weeks ago 6 months 2 weeks ago
MVAPICH2 and/or STAR-CCM+ MPI job failure and workaround Cardinal, Software Resolved
(workaround)

... Read more

1 year 3 months ago 7 months 2 weeks ago
OneDrive Connector File Transfer Issue with Globus Resolved

Update:

We deployed the fix from Globus: https://docs.globus.org/globus-connect-server/... Read more

8 months 3 days ago 7 months 3 weeks ago
OpenMPI 4 and NVHPC MPI Compatibility Issues with SLURM HWLOC Ascend, Cardinal, Software Resolved
(workaround)

A pure MPI application using mpirun or mpiexec with more ranks than the number of NUMA nodes may encounter an error similar to the following:... Read more

10 months 3 weeks ago 7 months 3 weeks ago

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