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Oakley, Owens

From WARP3D's webpage:

Owens

Here are the queues available on Owens. Please note that you will be routed to the appropriate queue based on your walltime and job size request.

Owens

The following are technical specifications for Owens.  We hope these may be of use to the advanced user.

TENTATIVE

R

Oakley, Owens

R is a language and environment for statistical computing and graphics. It is similar to the S language and environment developed at Bell Laboratories (formerly AT&T, now Lucent Technologies). R provides a wide variety of statistical and graphical techniques, and is highly extensible.

Owens

Compilers

C, C++ and Fortran are supported on the Owens cluster. Intel, PGI and GNU compiler suites are available. The Intel development tool chain is loaded by default. Compiler commands and recommended options for serial programs are listed in the table below. See also our compilation guide.

On July 12th, 2016 OSC migrated its old GPFS and Lustre filesystems to new Project and Scratch services, respectively. We've moved 1.22 PB of data, and the new capacities are 3.4 PB for Project, and 1.1 PB for Scratch. If you store data on these services, there are a few important details to note.

Oakley, Owens

Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB.

Notice: This page refers to an older version of OnDemand. For information on the new OnDemand3, please click here.

 

OnDemand provides two related job managment tools, one which allows you to create and submit jobs via your web browser, and the other allows you to monitor your queued and running jobs.

Glenn, Oakley
Notice: This page refers to an older version of OnDemand. For information on the new OnDemand3, please click here.

 

OnDemand provides a web-based FTP client that can be used to upload and download files to your OSC home directory or project directory, and move, delete, rename, modify permissions, and even edit files.

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