Bioperl

Bioperl offers a set of perl modules which can be used for sequence manipulation. Knowledge of PERL programming is required.

Availability & Restrictions

Bioperl is available without restriction to all OSC users.

The following versions of Bioperl are available:

Version Glenn Oakley
1.5.1 X  
1.6.1 X X

Usage

Using Bioperl

This is an example of how to use bioperl and access the sequence package on the Oakley Cluster.

use lib '/usr/local/bioperl/1.6.1/lib/perl5/'
use Bio::Seq;

This is an example of how to use bioperl and access the sequence package on the Glenn Cluster.

use lib '/usr/local/biosoftw/bioperl-1.6.1/lib/perl5/'
use Bio::Seq;

Further Reading

See Also

Supercomputer: 
Service: 
Fields of Science: