eXpress

eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences.

Availability and Restrictions

Versions

The following versions of eXpress are available on OSC clusters:

Version Oakley Owens
1.5.1 X* X*
* Current default version

You can use  module spider express to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

eXpress is available to all OSC users without restriction.

Usage

Usage on Oakley

Set-up

To configure your environment for use of eXpress, run the following command: module load express. The default version will be loaded. To select a particular eXpress version, use module load express/version. For example, use module load express/1.5.1 to load eXpress 1.5.1.

Usage on Owens

Set-up

To configure your environment for use of eXpress, run the following command: module load express. The default version will be loaded. To select a particular eXpress version, use module load express/version. For example, use module load express/1.5.1 to load eXpress 1.5.1.

Further Reading

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