GMAP

GMAP is a genomic mapping and alignment program for mRNA and EST sequences.

Availability and Restrictions

Versions

The following versions of GMAP are available on OSC clusters:

Version Oakley Owens
2016-05-25 X*  
2016-06-09   X*
* Current default version

You can use module spider gmap to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

GMAP is available to all OSC users without restriction.

Usage

Usage on Oakley

Set-up

To configure your environment for use of GMAP, run the following command: module load gmap. The default version will be loaded. To select a particular GMAP version, use module load gmap/version. For example, use  module load gmap/2016-05-25 to load GMAP 2016-05-25.

Usage on Owens

Set-up

To configure your environment for use of GMAP, run the following command: module load gmap. The default version will be loaded. To select a particular GMAP version, use module load gmap/version. For example, use module load gmap/2016-06-09 to load GMAP 2016-06-09.

Further Reading

Service: 
Fields of Science: