FSL

FSL is a library of tools for analyzing FMRI, MRI and DTI brain imaging data.

Availability and Restrictions

Versions

The following versions of FSL are available on OSC clusters:

Version	Pitzer	Cardinal
6.0.4	X
6.0.7.13	X	X

* Curent default version

You can use module spider fsl to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

FSL is available to academic OSC users. Please review the license agreement carefully before use. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

Analysis Group, University of Oxford/ freeware

Usage

Usage on Pitzer

Set-up

Configure your environment for use of FSL with module load fsl. This will load the default version.

Using FSL GUI

Access the FSL GUI with command for bash

source $FSLDIR/etc/fslconf/fsl.sh
fsl

For csh, one can use

source $FSLDIR/etc/fslconf/fsl.csh
fsl

This will bring up a menu of all FSL tools. For information on individual FSL tools see FSL Overview page.

Using BASIL GUI

module load fsl/6.0.4
source $FSLDIR/etc/fslconf/fsl.sh
asl_gui --matplotlib

For more information, please visit https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/BASIL.

FSL