OpenFOAM v1906 has been installed on the Pitzer cluster.
OpenFOAM 7.0 has been installed on the Pitzer cluster.
VMD 1.9.4 (a35) has been installed on Pitzer cluster; usage is via the module vmd/1.9.4. For information on available executables and installation details see the software page for VMD.
LAMMPS stable version 5Jun19 has been installed with MVAPICH2, OpenMPI, and IntelMPI on Owens and Pitzer. These are GPU enabled installations. Usage is via the module lammps/5Jun19. For installation details, such as, available packages and example batch scripts, use command: "module help lammps/5Jun19". For help loading an installation, use command: "module spider lammps/5Jun19".
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.
Availability and Restrictions
The following versions of bedtools are available on OSC clusters: