Pitzer

MotionCor2

MotionCor2 uses multi-GPU acceleration to correct anisotropic cryo-electron microscopy images at the single pixel level across the whole frame, making it suitable for single particle and tomographic images. Iterative, patch-based motion detection is combined with spatial and temporal constraints and dose weighting.

Availability and Restrictions

Versions

The following versions are available on OSC clusters:

VisIt

VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool for visualizing data defined on two- and three-dimensional structured and unstructured meshes.

 

STAR 2.7.9a is available

Date: 
Monday, September 27, 2021 - 12:45pm
System(s): 

STAR 2.7.9a has been installed with gnu/10.3.0 compilers on Owens and Pitzer.  Usage is via the module star/2.7.9a.  For help loading an installation, use the command:  "module spider star/2.7.9a".  That command also emits information on the available executables and installation details.

System Downtime Sept 28, 2021

A downtime for all OSC HPC systems is scheduled from 7 a.m. to 9 p.m., Tuesday, September 28, 2021. The downtime will affect the Pitzer and Owens Clusters, web portals, state-wide licenses, HPC file servers, and MyOSC. Login services will not be available during this time. In preparation for the downtime, jobs that cannot be completed before 7 a.m., September 28, 2021 will not start. Jobs that are not started on clusters will remain until after the downtime and then will be queued to start once the system is returned to production status.

HMMER

HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMS). HMMER is designed to detect remote homologs as sensitively as possible, relying on the strength of its underlying probability models.

Availability and Restrictions

Versions

HMMER is available on the OSC clusters. These are the versions currently available:

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