Pitzer

Mathematica

Mathematica is a mathematical computation program. It is capable in many areas of technical computing including but not limited to neural networks, machine learning, image processing, geometry, data science and visualizations.

Tinker

Tinker is a molecular modeling package. Tinker provides a general set of tools for molecular mechanics and molecular dynamics.

Rolling reboot of all clusters starting from June 14 2023

Beginning 9am on Wednesday, June 14, we will be having rolling reboots of all clusters (Owens, Pitzer, and Ascend). This includes both login and compute nodes and will be done to perform OS updates. Login nodes will be rebooted at 9am on June 14, which will leave them unavailable for approximately 5-10 minutes. The rolling reboots won't affect any running batch jobs, but users may experience longer than usual wait times on all clusters.

MRIcroGL

MRIcroGL is medical image viewer that allows you to load overlays (e.g. statistical maps), draw regions of interest (e.g. create lesion maps).

Availability and Restrictions

Versions

MRIcroGL is available on Pitzer cluster. These are the versions currently available:

dcm2nii

dcm2niix is designed to convert neuroimaging data from the DICOM format to the NIfTI format. The DICOM format is the standard image format generated by modern medical imaging devices. However, DICOM is very complicated and has been interpreted differently by different vendors. The NIfTI format is popular with scientists, it is very simple and explicit. However, this simplicity also imposes limitations (e.g. it demands equidistant slices).

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