MUSCLE

MUSCLE is a program for creating multiple alignments of protein sequences.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Version	Pitzer
3.8.31	X*

* Current default version

You can use module spider muscle to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

MUSCLE is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

Public domain software.

Usage

Usage on Pitzer

Set-up

To configure your environment for use of MUSCLE, run the following command: module load muscle. The default version will be loaded. To select a particular MUSCLE version, use module load muscle/version. For example, use module load muscle/3.8.31 to load MUSCLE 3.8.31.