XSEDE ACSC Faculty Workshop Materials

Description	Link
XSEDE User Portal	https://www.xsede.org/
Science Gateways	https://www.xsede.org/gateways-listing
Campus Champions	https://www.xsede.org/web/guest/campus-champions
Course training calendar	https://www.xsede.org/web/xup/course-calendar
Online courses	https://www.xsede.org/web/xup/online-training
Getting started (accounts and services)	https://www.xsede.org/using-xsede

Resources for Computational Modeling

Description	Link
National Science Digital Library (NSDL)	https://nsdl.oercommons.org/
GridChem	https://www.cct.lsu.edu/research/grid-computing/grid-chem-ccg
Computational Science Education Reference Desk – National Science Digital Library – models with exercises and reviews	http://www.shodor.org/refdesk
HPC University – workshops and pointers to materials	http://hpcuniversity.org/
Shared science instructional modules and models	http://phet.colorado.edu/
Computational physics materials	http://www.ucomp.org/
Computational biology for biology educators	http://www.computationalscience.org/cbbe
Computational chemistry for chemistry educators	http://www.computationalscience.org/ccce
K12 Modeling Examples	https://www.osc.edu/~sgordon/k12
Shodor Modeling Examples	http://www.shodor.org/talks-new/
Agent based models for economics	http://www2.econ.iastate.edu/tesfatsi/ace.htm
Systems Dynamics Society Proceedings 2013	http://www.systemdynamics.org/conferences/2013/proceed/
MATLAB demos in engineering mechanics	http://www.mathworks.com/matlabcentral/linkexchange/links/3539-mechanics-demos-for-first-year-physics-and-engineering
Tools, lesson plans, and datasets relating to biological modeling	http://bioquest.org
NASA Aeronautics Models	http://www.grc.nasa.gov/WWW/k-12/aerores.htm
Engineering applets from Virginia Tech	http://www.engapplets.vt.edu/
Large number of physics and mathematics applets	http://www.falstad.com/mathphysics.html
Virtual Physics Laboratory	http://www.phy.ntnu.edu.tw/ntnujava/
Earthquake engineering resources Vensim Model Building Tutorial ExplainShell - parse Linux commands	http://nees.org/education/for-teachers/collegiate-teachers http://vensim.com/building-a-simple-vensim-model/ https://explainshell.com/

Digital Humanities and Social Science Resources

Description	Link
Digital Humanities Now	http://digitalhumanitiesnow.org/
Journal of Digital Humanities	http://journalofdigitalhumanities.org/
Alliance of Digital Humanities Organizations	http://adho.org/
Scholarly Tales	https://scholarlytales.hcommons.org/
Association for Computers and the Humanities	http://ach.org/
Humanities and Social Sciences Collaboratory	http://www.hastac.org/
Online Guide for Newcomers to Agent Modeling	http://www2.econ.iastate.edu/tesfatsi/abmread.htm
Repast Open Source Agent Modeling	http://repast.sourceforge.net/
Brookings National Agent Based Model	http://www.brookings.edu/about/centers/dynamics/us-abm
Systems Modeling Blog with Examples	https://metasd.com/2009/06/good-modeling-practices/#more-411
Office of Digital Humanities	https://www.neh.gov/divisions/odh
Simulation for the Social Scientist	http://cress.soc.surrey.ac.uk/s4ss/links.html
Repast Application Papers	http://repast.sourceforge.net/papers.php
Six Degrees of Francis Bacon Simulation of Historic Settlement Patterns Digital Humanities Research Topics Exploring Population Networks Dartmouth College Digital Humanities Repository Election Modeling Tools Systems Modeling Roadmap System Dynamics in the Traditional Humanities Social Network Visualizer Open Case Studies	http://www.sixdegreesoffrancisbacon.com/?ids=10003747&min_confidence=60&... http://escholarship.org/uc/item/2zd1t887 https://www.frontiersin.org/journals/digital-humanities#research-topics https://programminghistorian.org/en/lessons/exploring-and-analyzing-network-data-with-python http://digitalhumanities.dartmouth.edu/projects/ http://election.princeton.edu/ http://static.clexchange.org/ftp/documents/roadmaps/RM7/D-4451-3.pdf https://www.systemdynamics.org https://socnetv.org/docs/index.html#analysis https://www.opencasestudies.org/

Bibliography

Thinking in Systems by Donella H. Meadows

Introduction to Modeling and Simulation with Matlab and Python by Steven Gordon and Brian Guilfoos

Data Carpentry for Biologists

Data Visualization Literacy (article)

Workshop Data

Software Downloads

Vensim Software - Download Vensim PLE - Free for educational uses
http://vensim.com/download.html

Presentation on formal programs in computational science
http://www.osc.edu/~sgordon/workshops/Comp_science_overview.pdf

Example Datasets

Description	Link
Package of datasets in zip file format	https://www.osc.edu/sites/osc.edu/files/staff_files/kcahill/New_CompThinking_Datasets.zip
Shodor Computational Thinking Exercises	http://www.shodor.org/talks-new/
Traffic Model Example	https://www.osc.edu/sites/osc.edu/files/staff_files/sgordon/trafficmodel.pdf
MATLAB Models Online	https://compsci.osc.edu/
Algebraic Thinking with Excel	http://shodor.org/talks/ncsi/excel/SimplePopulation.xls
Dynamic Variation with Excel	http://shodor.org/talks/ncsi/excel/Snake2.xls
Iteration and Diffusion with Excel	http://shodor.org/talks/ncsi/excel/SaltDiffusion.xls
Population dynamics with Vensim	http://shodor.org/talks/ncsi/vensim/BunnyComparison.mdl
Disease SIR Model with Vensim	http://shodor.org/talks/ncsi/vensim/AdvancedSIR.mdl
Malaria Model with Vensim	http://shodor.org/talks/ncsi/vensim/MalariaEpidModel.mdl
Falling objects with Vensim	http://shodor.org/talks/ncsi/vensim/FallingRockWithDrag.mdl
Pharmokinetics with Vensim	http://shodor.org/talks/ncsi/vensim/Pharma.mdl