Pitzer
MRIcroGL
MRIcroGL is medical image viewer that allows you to load overlays (e.g. statistical maps), draw regions of interest (e.g. create lesion maps).
Availability and Restrictions
Versions
MRIcroGL is available on Pitzer cluster. These are the versions currently available:
MRIcroGL 1.2.20220720 now available on Pitzer
Date:
Thursday, May 18, 2023 - 12:45pm
System(s):
MRIcroGL 1.2.20220720 is now available on Pitzer
dcm2nii
dcm2niix is designed to convert neuroimaging data from the DICOM format to the NIfTI format. The DICOM format is the standard image format generated by modern medical imaging devices. However, DICOM is very complicated and has been interpreted differently by different vendors. The NIfTI format is popular with scientists, it is very simple and explicit. However, this simplicity also imposes limitations (e.g. it demands equidistant slices).
dcm2nii version 11_04_2023 now available
Date:
Wednesday, May 3, 2023 - 2:15pm
System(s):
dcm2nii version 11_04_2023 is now available on Pitzer cluster.
Possible job failures due to MPI library change after May 20
There are changes on MPI libraries on Pitzer after May 20. We will upgrade MOFED from 4.9 to 5.6 and recompile all OpenMPI and Mvapich2 against the newer MOFED version. Users with their own MPI libraries may see job failures and will need to rebuild their applications linked against the MPI libraries.
Outage of most of 48-core Pitzer and a few Owens nodes May 20
Beginning Saturday, May 20, 2023, at 7 a.m., there will be an outage of most of 48core Pitzer and a few Owens nodes for UPS repair work. We anticipate this work to be completed at 2 p.m. on May 20.
mriqc/23.1.0rc0
Date:
Friday, April 21, 2023 - 1:45pm
System(s):
mriqc/23.1.0rc0 is now available on Pitzer
