Trinity
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.
Availability and Restrictions
The following versions of Trinity are available on OSC clusters:
Owens
Account option required for jobs
There has been a recent to the batch submission process where a job
needs to specify a project account at submission.
If using https://ondemand.osc.edu then enter a project account in the account or project fields.
See https://www.osc.edu/supercomputing/batch-processing-at-osc/job-scripts for more info.
OpenMolcas 19.11 available on Owens
Date:
Monday, December 28, 2020 - 11:15am
System(s):
OpenMolcas 19.11 is available on Owens cluster; usage via module load openmolcas/19.11.
StarCCM 15.06.008 available on Owens
Date:
Tuesday, December 22, 2020 - 4:30pm
System(s):
StarCCM 15.06.008 is available on Owens
module load starccm/15.06.008 # for double precision
module load starccm/15.06.008-mixed # for mixed precision
Amber 20 is updated
Amber version 20 has been updated and installed with Intel and GNU compilers and MVAPICH2 on Owens and Pitzer. These include Amber and AmberTools. Usage is via the module amber/20. For installation details, such as, available packages and example batch scripts, use command: "module help amber/20". For help loading an installation, use command: "module spider amber/20".
LAMMPS 29Oct20 is available
LAMMPS stable version 29Oct20 has been installed with MVAPICH2, OpenMPI, and IntelMPI on Owens and Pitzer. These are GPU enabled installations. Usage is via the module lammps/29Oct20. For installation details, such as, available packages and example batch scripts, use command: "module help lammps/29Oct20". For help loading an installation, use command: "module spider lammps/29Oct20".
Owens Programming Environment (PBS)
This document is obsoleted and kept as a reference to previous Owens programming environment. Please refer to here for the latest version.
