Clustal W
Clustal W is a multiple sequence alignment program written in C++.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Pitzer
MUSCLE
MUSCLE is a program for creating multiple alignments of protein sequences.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
BWA Software Vulnerability
Due to a recent software vulnerability discovered in bwa versions 0.7.17 and 0.7.13, it is highly recommended that you immediately stop using these versions and instead use bwa/0.7.17-r1198 which contains a patch to mitigate this vulnerability.
Details on the vulnerability can be found in the following webpages:
https://nvd.nist.gov/vuln/detail/CVE-2019-10269#vulnCurrentDescriptionTitle
https://coreymhudson.github.io/bwa_vulnerabilties/
Please contact OSC Help if you have any questions or concerns.
Toll Free: (800) 686-6472
Local: (614) 292-1800
Email: oschelp@osc.ed
Horovod
"Horovod is a distributed training framework for TensorFlow, Keras, PyTorch, and MXNet. The goal of Horovod is to make distributed Deep Learning fast and easy to use. The primary motivation for this project is to make it easy to take a single-GPU TensorFlow program and successfully train it on many GPUs faster."
Quote from Horovod Github documentation.
metilene
metilene is a software tool to annotate differentally methylated regions and differentially methylated CpG sites.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
OSCprojects
Introduction
OSCprojects is a command developed at OSC for use on OSC's systems and is used to view your logged in accounts project information.
