Pitzer
Neuropointillist
Neuropointillist is an in-development R package which defines functions to help scientists to run voxel-wise models using R neuroimaging data.
Availability and Restrictions
Versions
The following versions are available on OSC clusters:
Problems with GPFS filesystem
DSI Studio
DSI Studio is a tractography software tool that maps brain connections and correlates findings with neuropsychological disorders. It is a collective implementation of several diffusion MRI methods, including diffusion tensor imaging (DTI), generalized q-sampling imaging (GQI), q-space diffeomorphic reconstruction (QSDR), diffusion MRI connectometry, and generalized deterministic fiber tracking.
MRIQC
MRIQC is a program that provides automatic prediction of quality and visual reporting of MRI scans.
Availability and Restrictions
Versions
The following versions are available on OSC clusters:
XDMOD outage: 9AM-4PM June 2 2021
fMRIPrep
fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.