Owens
TrimGalore
TrimGalore is a wrapper tool that automates quality and adapter trimming to FastQ files. It also provides functionality to RRBS sequence files.
FastQC
FastQC provides quality control checks of high throughput sequence data that identify areas of the data that may cause problems during further analysis.
Owens SSH key fingerprints
These are the public key fingerprints for Owens:
owens: ssh_host_rsa_key.pub = 18:68:d4:b0:44:a8:e2:74:59:cc:c8:e3:3a:fa:a5:3f
owens: ssh_host_ed25519_key.pub = 1c:3d:f9:99:79:06:ac:6e:3a:4b:26:81:69:1a:ce:83
owens: ssh_host_ecdsa_key.pub = d6:92:d1:b0:eb:bc:18:86:0c:df:c5:48:29:71:24:af
Perl
Perl is a family of programming languages.
Gromacs 2016.4 available on Owens
Gromacs 2016.4 has been installed on Owens; usage is via the module gromacs/2016.4.
GLOBUS OUTAGE 11AM-3PM DEC 9, 2017
StringTie
StringTie assembles aligned RNA-Seq reads into transcripts that represent splice variants in RNA-Seq samples.
Cufflinks
Cufflinks is a program that analyzes RNA -Seq samples. It assembles aligned RNA-Seq reads into a set of transcripts, then inspects the transcripts to estimate abundances and test for differential expression and regulation in the RNA-Seq reads.
HISAT2
HISAT2 is a graph-based alignment program that maps DNA and RNA sequencing reads to a population of human genomes.