Owens

ROLLING REBOOTS OF ALL CLUSTERS STARTING FEBRUARY 5

We will have rolling reboots of Oakley, Ruby and Owens clusters starting from Monday Feb 5, 2018 to address recent CPU vulnerabilities. Login nodes will be rebooted first. The rolling reboots won't affect any running jobs, but users may experience longer queue wait time than usual on all clusters. We apologize for any inconvenience this may cause you. Please contact oschelp@osc.edu if you have any questions.

TrimGalore

TrimGalore is a wrapper tool that automates quality and adapter trimming to FastQ files. It also provides functionality to RRBS sequence files.

FastQC

FastQC provides quality control checks of high throughput sequence data that identify areas of the data that may cause problems during further analysis.

Owens SSH key fingerprints

These are the public key fingerprints for Owens:
owens: ssh_host_rsa_key.pub = 18:68:d4:b0:44:a8:e2:74:59:cc:c8:e3:3a:fa:a5:3f
owens: ssh_host_ed25519_key.pub = 1c:3d:f9:99:79:06:ac:6e:3a:4b:26:81:69:1a:ce:83
owens: ssh_host_ecdsa_key.pub = d6:92:d1:b0:eb:bc:18:86:0c:df:c5:48:29:71:24:af

GLOBUS OUTAGE 11AM-3PM DEC 9, 2017

An outage of Globus service is scheduled from 11 a.m. to 3 p.m. Saturday, December 9, 2017 for scheduled upgrades from Globus. Active file transfers will be suspended during this time and they will resume when the Globus service is restored. Users trying to access the service at globus.org will see a maintenance page until the service is restored.

Cufflinks

Cufflinks is a program that analyzes RNA -Seq samples. It assembles aligned RNA-Seq reads into a set of transcripts, then inspects the transcripts to estimate abundances and test for differential expression and regulation in the RNA-Seq reads.

HISAT2

HISAT2 is a graph-based alignment program that maps DNA and RNA sequencing reads to a population of human genomes.

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