This document will guide you on how to launch Rstudio App and acess Parallel R workshop material through OSC onDemand.
Step 1: Log on to https://ondemand.osc.edu. Please see this guide on how to use OnDemand service.
Step 2: Launch Rstudio App
Connectome Workbench is an open source, freely available visualization and analysis tool for neuroimaging data, especially data generated by the Human Connectome Project.
Connectome Workbench is available on Pitzer and Cardinal clusters. These are the versions currently available:
Gaussian is a very popular general purpose electronic structure program. Recent versions can perform density functional theory, Hartree-Fock, Möller-Plesset, coupled-cluster, and configuration interaction calculations among others. Geometry optimizations, vibrational frequencies, magnetic properties, and solution modeling are available. It performs well as black-box software on closed-shell ground state systems.
The XDMoD tool at xdmod.osc.edu can be used to get an overview of how accurate the requested time of jobs are with the elapsed time of jobs.
To request an amount of time for a job, you can use the following header.
#SBATCH --time=xx:xx:xx
The elapsed time is how long the job ran for before completing. This can be obtained for completed jobs using the sacct command.
Gurobi is a mathematical optimization solver that supports a variety of programming and modeling languages.
The following versions of bedtools are available on OSC clusters:
This documentation describes how to install tensorflow package locally in your $HOME space. For more details on Tensorflow see the software page.
Load python module
OSCprojects is a command developed at OSC for use on OSC's systems and is used to view your logged in accounts project information.
OSCgetent is a command developed at OSC for use on OSC's systems and is similar to the standard getent command. It lets one view group information.
OSCusage is a command developed at OSC for use on OSC's systems. It allows a user to see information on their project's usage, including different users and their jobs.
