autodock-gpu 1.6 available on Cardinal
Date:
Friday, May 8, 2026 - 1:45pm
System(s):
autodock-gpu 1.6 is available on Cardinal. It is installed with numwi=128
module load autodock-gpu/1.6
Cardinal
System Downtime May 12 2026
A downtime for OSC HPC systems is scheduled from 7 a.m. to 9 p.m., Tuesday, May 12, 2026. The downtime will affect the Pitzer, Cardinal and Ascend Clusters, web portals, the state-wide licenses and HPC file servers. MyOSC (the client portal) will be available during the downtime. In preparation for the downtime, the batch scheduler will not start jobs that cannot be completed before 7 a.m., May 12. Jobs that are not started on clusters will be held until after the downtime and then started once the system is returned to production status.
Reboot of Public-Facing Systems for Security Fix
Due to a critical security vulnerability we need to reboot public-facing systems to deploy a mitigation against the vulnerability. Please use support.osc.edu if you have questions or concerns.
Default MPI Module Update
The default MPI module, MVAPICH, will be updated from version 3.0 to 4.1 on May 12, 2026, during the upcoming scheduled downtime. For more information, please visit: https://www.osc.edu/resources/technical_support/hpc_changelog/2026/default_mpi_module_update
Code Server
Code Server provides a browser-based instance of Visual Studio Code, enabling users to write, edit, and run code directly on OSC cluster resources without local installation.
PyMOL
PyMOL is a molecular visualization tool used to view, analyze, and create high-quality 3D images of biological molecules like proteins and DNA.
Availability and Restrictions
Versions
The following versions of PyMOL are available on OSC clusters:
OnDemand Shell App Not Working in Firefox 148
We are aware of an issue where the OnDemand Shell app is not functioning in Firefox 148. If you encounter this problem, please use a different browser to access the OnDemand Shell app until this issue is resolved. We have confirmed that Chrome, Edge, and Safari are working.
