Account Consolidation Guide
Initial account consolidation took place during the July 17th, 2018 downtime.
Please contact OSC Help if you need further information.
Pitzer
Scientific Database List
This page provides a list of the scientific database available at OSC.
Abaqus
ABAQUS is a finite element analysis program owned and supported by SIMULIA, the Dassault Systèmes brand for Realistic Simulation.
Availability and Restrictions
Versions
The available programs are ABAQUS/CAE, ABAQUS/Standard and ABAQUS/Explicit. The versions currently available at OSC are:
Linaro DDT
Linaro DDT is a graphical debugger for HPC applications. It supports pthreads, OpenMP, or MPI code on CPU, GPU, and MIC based architectures.
Availability & Restrictions
Versions
The Linaro DDT versions currently available at OSC are:
FastQC
FastQC provides quality control checks of high throughput sequence data that identify areas of the data that may cause problems during further analysis.
Perl
Perl is a family of programming languages.
Cufflinks
Cufflinks is a program that analyzes RNA -Seq samples. It assembles aligned RNA-Seq reads into a set of transcripts, then inspects the transcripts to estimate abundances and test for differential expression and regulation in the RNA-Seq reads.
Apptainer
Apptainer (formerly Singularity) is a container system designed for use on High Performance Computing (HPC) systems. It allows users to run both Docker and Singularity containers.
HTSlib
HTSlib is a C library used for reading and writing high-throughput sequencing data.
RELION
RELION (REgularised LIkelihood OptimisatioN) is a stand-alone computer program for the refinement of 3D reconstructions or 2D class averages in electron cryo-microscopy.
