BLAST Database
OSC periodically updates The NCBI BLAST database.
Versions
BLAST database is available on the Pitzer and Cardinal clusters. The versions currently available at OSC are:
Cardinal
CMake
CMake is a family of compilation tools that can be used to build, test and package software.
Availability and Restrictions
Versions
The current versions of CMake available at OSC are:
Scientific Database List
This page provides a list of the scientific database available at OSC.
VMD
VMD is a visulaization program for the display and analysis of molecular systems.
Availability and Restrictions
Versions
The following versions of VMD are available on OSC clusters:
Abaqus
ABAQUS is a finite element analysis program owned and supported by SIMULIA, the Dassault Systèmes brand for Realistic Simulation.
Availability and Restrictions
Versions
The available programs are ABAQUS/CAE, ABAQUS/Standard and ABAQUS/Explicit. The versions currently available at OSC are:
FastQC
FastQC provides quality control checks of high throughput sequence data that identify areas of the data that may cause problems during further analysis.
Perl
Perl is a family of programming languages.
Cufflinks
Cufflinks is a program that analyzes RNA -Seq samples. It assembles aligned RNA-Seq reads into a set of transcripts, then inspects the transcripts to estimate abundances and test for differential expression and regulation in the RNA-Seq reads.
Apptainer (formerly Singularity)
Apptainer (formerly Singularity) is a container system designed for use on High Performance Computing (HPC) systems. It allows users to run both Docker and Singularity containers.
HTSlib
HTSlib is a C library used for reading and writing high-throughput sequencing data.
