MRIQC

MRIQC is a program that provides automatic prediction of quality and visual reporting of MRI scans.

Availability and Restrictions

Versions

The following versions are available on OSC clusters:

Version Pitzer
0.16.1 X*
* Current default version

You can use module spider mriqc to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

MRIQC is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

MRIQC uses the 3-clause BSD license; the full license is in the file LICENSE in the mriqc distribution. Open-source.

All trademarks referenced herein are property of their respective holders.

Copyright (c) 2015-2017, the mriqc developers and the CRN. All rights reserved.

Usage

Usage on Pitzer

Set-up

To configure your environment for use of mriqc, run the following command: module load mriqc. The default version will be loaded. To select a particular MRIQC version, use module load mriqc/version. For example, use module load mriqc/0.16.1 to load MRIQC 0.16.1.

MRIQC is installed in a singularity container.  MRIQC_IMG environment variable contains the container image file path. So, an example usage would be

module load mriqc
singularity exec $MRIQC_IMG mriqc --version

For more information about singularity usages, please read OSC singularity page.

Further Reading

Supercomputer: 
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