VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.
Availability and Restrictions
The following versions of VCFtools are available on OSC clusters:
You can use
module spider vcftools to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
VCFtools is available to all OSC users without restriction.
Publisher/Vendor/Repository and License Type
Adam Auton, Petr Danecek, Anthony Marcketta/ Open source
Usage on Owens
module load vcftools. The default version will be loaded. To select a particular VCFtools version, use
module load vcftools/version. For example, use
module load vcftools/0.1.14to load VCFtools 0.1.14.
Usage on Pitzer
module load vcftools. The default version will be loaded.