bcftools

bcftools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF.

Availability and Restrictions

The following versions of bcftools are available on OSC clusters:

Version Oakley OWEns
1.3.1 X* X*
*: Current default version

You can use  module spider bcftools to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

bcftools is available to all OSC users without restriction.

Usage on Oakley

Set-up

To configure your environment for use of bcftools, run the following command:   module load bcftools. The default version will be loaded. To select a particular bcftools version, use   module load bcftools/version . For example, use  module load bcftools/1.3.1 to load bcftools 1.3.1.

Usage on Owens

Set-up

To configure your environment for use of bcftools, run the following command: module load bcftools. The default version will be loaded. To select a particular bcftools version, use   module load bcftools/version . For example, use  module load bcftools/1.3.1 to load bcftools 1.3.1.

Further Reading

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