HISAT2 is a graph-based alignment program that maps DNA and RNA sequencing reads to a population of human genomes.
Availability and Restrictions
HISAT2 is available on the Owens Cluster. The versions currently available at OSC are:
You can use
module spider hisat2 to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
HISAT2 is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
https://ccb.jhu.edu/software/hisat2, Open source
Usage on Owens
To configure your enviorment for use of HISAT2, use command
module load hisat2. This will load the default version.