HISAT2

HISAT2 is a graph-based alignment program that maps DNA and RNA sequencing reads to a population of human genomes.

Availability and Restrictions

Versions

HISAT2 is available on the Owens Cluster. The versions currently available at OSC are:

VERSION OWENS
2.1.0 X*
* Current Default Version

You can use module spider hisat2 to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

HISAT2 is available without restriction to all OSC users.

Publisher/Vendor/Repository and License Type

https://ccb.jhu.edu/software/hisat2, Open source

Usage

Usage on Owens

Set-up

To configure your enviorment for use of HISAT2, use command module load hisat2. This will load the default version.

Further Reading

Supercomputer: 
Fields of Science: