HISAT2 is a graph-based alignment program that maps DNA and RNA sequencing reads to a population of human genomes.
Availability and Restrictions
HISAT2 is available on the Owens Cluster. The versions currently available at OSC are:
You can use
module spider hisat2 to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
HISAT2 is available without restriction to all OSC users.
Publisher/Vendor/Repository and License Type
https://ccb.jhu.edu/software/hisat2, Open source
Usage on Owens
To configure your enviorment for use of HISAT2, use command
module load hisat2. This will load the default version.