FastQC provides quality control checks of high throughput sequence data that identify areas of the data that may cause problems during further analysis.
Availability and Restrictions
Versions
FastQC is available on the Owens cluster. The versions currently available at OSC are:
| Version | Owens | Pitzer |
|---|---|---|
| 0.11.5 | X* | |
| 0.11.7 | X | |
| 0.11.8 | X* |
* Current Default Version
You can use module spider fastqc to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
FastQC is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Babraham Bioinformatics, Open source
Usage
Usage on Owens
Set-up
To configure your enviorment for use of FastQC, use command module load fastqc. This will load the default version.
Usage on Pitzer
Set-up
To configure your enviorment for use of FastQC, use command module load fastqc. This will load the default version.
Further Reading
Fields of Science:
