Cufflinks is a program that analyzes RNA -Seq samples. It assembles aligned RNA-Seq reads into a set of transcripts, then inspects the transcripts to estimate abundances and test for differential expression and regulation in the RNA-Seq reads.
Availability and Restrictions
Versions
Cufflinks is available on the Owens Cluster. The versions currently available at OSC are:
| Version | Owens |
|---|---|
| 2.2.1 | X* |
* Current Default Version
You can use module spider cufflinks to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
Cufflinks is available to all OSC users. If you have any questions, please contact OSC Help.
Publisher/Vendor/Repository and License Type
Cole Trapnell et al., Open source
Usage
Usage on Owens
Set-up
To configure your enviorment for use of Cufflinks, use command module load cufflinks. This will load the default version.
Further Reading
Supercomputer:
Fields of Science:
