Cufflinks

Cufflinks is a program that analyzes RNA -Seq samples. It assembles aligned RNA-Seq reads into a set of transcripts, then inspects the transcripts to estimate abundances and test for differential expression and regulation in the RNA-Seq reads.

Availability and Restrictions

Versions

Cufflinks is available on the Owens Cluster. The versions currently available at OSC are:

VERSION OAKLEY OWENS
2.2.1 X* X*
* Current Default Version

You can use module spider cufflinks to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

Cufflinks is available without restriction to all OSC users.

Publisher/Vendor and License Type

Cole Trapnell et al., Open source

Usage

Usage on Owens

Set-up

To configure your enviorment for use of Cufflinks, use command module load cufflinks. This will load the default version.

Further Reading

Supercomputer: 
Fields of Science: