Cufflinks is a program that analyzes RNA -Seq samples. It assembles aligned RNA-Seq reads into a set of transcripts, then inspects the transcripts to estimate abundances and test for differential expression and regulation in the RNA-Seq reads.
Availability and Restrictions
Cufflinks is available on the Owens Cluster. The versions currently available at OSC are:
You can use
module spider cufflinks to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Cufflinks is available without restriction to all OSC users.
Publisher/Vendor/Repository and License Type
Cole Trapnell et al., Open source
Usage on Owens
To configure your enviorment for use of Cufflinks, use command
module load cufflinks. This will load the default version.