On September 22nd, OSC switched to Slurm for job scheduling and resource management on the Pitzer Cluster, along with the deployment of the new Pitzer hardware. We are in the process of updating the example job scripts for each software. If a Slurm example is not yet available, please consult our general Slurm information page or contact OSC help.

STAR

STAR: Spliced Transcripts Alignment to a Reference.

Availability and Restrictions

Versions

The following versions of STAR are available on OSC clusters:

Version Owens
2.5.2a X*
2.6.0a X
* Current default version

You can use module spider star to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

STAR is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

Alexander Dobin, Open source

Usage

Usage on Owens

Set-up

To configure your environment for use of STAR, run the following command: module load star. The default version will be loaded. To select a particular STAR version, use module load star/version. For example, use module load star/2.5.2a to load STAR 2.5.2a.

Further Reading

Supercomputer: 
Service: 
Fields of Science: