FSL is a library of tools for analyzing FMRI, MRI and DTI brain imaging data.
Availability and Restrictions
The following versions of FSL are available on OSC clusters:
You can use
module spider fsl to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
FSL is available to all academic OSC users with proper validation. In order to obtain validation, please contact OSC Help for further instruction.
Publisher/Vendor/Repository and License Type
Analysis Group, University of Oxford/ freeware
Usage on Owens
Configure your environment for use of FSL with
module load fsl. This will load the default version.
Using FSL GUI
Access the FSL GUI with command for bash
source $FSLDIR/etc/fslconf/fsl.sh fsl
For csh, one can use
source $FSLDIR/etc/fslconf/fsl.csh fsl
This will bring up a menu of all FSL tools. For information on individual FSL tools see FSL Overview page.