Changes to HPC systems are listed below, optionally filtered by system.
Gromacs 2016.4 has been installed on Owens; usage is via the module gromacs/2016.4.
R/3.4.2 is now available on Owens
Tensorflow 1.3 is now available on Owens
module load python/3.6
module load cuda/8.0.44
PGI 17.10 is now available on Owens, Oakley, and Ruby. Use with "module load pgi/17.10.0".
OpenMPI 2.1.2 is available on Owens for compilers gnu/4.8.5 and intel/16.0.3. Load compiler and use with "module load openmpi/2.1.2"
samtools/HTSlib 1.6 is available on Owens and Oakley.
module load htslib/1.6
module load samtools/1.6
relion2.0 is available on Owens.
module load relion2/2.0
Starccm 12.04.010 for mixed precision is available on oakley.
module load starccm/12.04.010-mixed
FreeSurfer 6.0.0 is now available on Owens. Use with module "freesurfer/6.0.0"
OpenMPI 1.10.7 and 2.0.3 are available on Owens for compilers gnu/4.8.5, intel/16.0.3, pgi/16.5.0. Load compiler and use with openmpi/1.10.7 or openmpi/2.0.3