Changes to HPC systems are listed below, optionally filtered by system.
LAMMPS stable version 16Mar18 has been installed on Owens, Ruby, and Oakley. These are GPU enabled installations. 16Mar18 is available with both MVAPICH2 and IntelMPI on all three clusters and on Owens also with OpenMPI. Usage is via the module lammps/16Mar18. For information on installation details, such as, available packages, see the output of the module help command: "module help lammp
BWA 0.7.17 is available on Owens.
Matlab Distributed Computing Server (MDCS) is no longer available.
The major purpose of this feature was to allow users to use their local licenses that OSC didn't provide.
However, now OSC provides all the toolboxes to all the academic users.
Freesurfer 5.3.0 is available on Owens.
Gnuplot 5.2.2 is now available on Owens. Load with module gnuplot/5.2.2
OpenFOAM 5.0 has been installed on Owens.
Quantum Espresso 6.2.1 has been installed on Owens; usage is via the module espresso/6.2.1. For information on available executables and installation details see the software page for Quantum Espresso or the output of the respective module help command, e.g.: module help espresso/6.2.1. Note that packages GIPAW and WEST were not installed because they are not available with 6.2.1.
Abaqus 2017 is installed on Owens.
PAPI 5.6.0 is installed on Owens. Load module with module load papi/5.6.0
Abaqus ships with its own installation of Python which is incompatible with the system Python. Changes were made to the abaqus module on Oakley putting the Abaqus version of Python in the user's path. This may cause problems if the user runs non-Abaqus Python programs with the abaqus module loaded. Oakley only.