Trinity

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.

Availability and Restrictions

The following versions of Trinity are available on OSC clusters:

Version Owens Pitzer
2.11.0 X X
* Current default version

You can use  module spider trinityrnaseq to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

Trinity is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

Broad Institute and the Hebrew University of Jerusalem, Open source

Usage

Usage on Pitzer and Owens

Set-up

To configure your environment for use of Trinity, run the following command: module load trinityrnaseq. The default version will be loaded. To select a particular Trinity version, use module load trinityrnaseq/version. For example, use module load trinityrnaseq/2.11.0 to load Trinity 2.11.0.

Further Reading

 
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