HTSlib is a C library used for reading and writing high-throughput sequencing data. HTSlib is the core library used by SAMtools. HTSlib also provides the bgzip, htsfile, and tabix utilities.
Availability and Restrictions
Versions
The versions of HTSlib currently available at OSC are:
| Version | Owens | Pitzer | Cardinal |
|---|---|---|---|
| 1.6 | X* | ||
| 1.11 | X* | ||
| 1.16 | X | X | |
| 1.20 | X* |
* Current Default Version
You can use module spider htslib to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
Access
HTSlib is available to all OSC users.
Publisher/Vendor/Repository and License Type
Genome Research Ltd., Open source
Usage
Usage on Owens and Pitzer
Set-up
To configure your enviorment for use of HTSlib, use command module load htslib. This will load the default version.
