HTSlib is a C library used for reading and writing high-throughput sequencing data. HTSlib is the core library used by SAMtools. HTSlib also provides the , , and utilities.
Availability and Restrictions
The versions of HTSlib currently available at OSC are:
You can use
module spider htslib to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
HTSlib is available to all OSC users.
Publisher/Vendor/Repository and License Type
Genome Research Ltd., Open source
Usage on Owens
To set up the environment for HTSlib on the OSC clusters, use the command:
module load htslib/1.6