HTSlib is a C library used for reading and writing high-throughput sequencing data. HTSlib is the core library used by SAMtools. HTSlib also provides the , , and utilities.
Availability and Restrictions
The versions of HTSlib currently available at OSC are:
You can use
module spider htslib to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
HTSlib is available to all OSC users.
Publisher/Vendor/Repository and License Type
Genome Research Ltd., Open source
Usage on Owens and Pitzer
To configure your enviorment for use of HTSlib, use command
module load htslib. This will load the default version.