Salmon

Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.

Availability and Restrictions

Versions

Salmon is available on the Owens Cluster. The versions currently available at OSC are:

VERSION OWENS
0.8.2 X*
* Current default version

You can use module spider salmonto view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

Salmon is available without restriction to all OSC users.

Publisher/Vendor/Repository and License Type

Patro, R. et al., Freeware

Usage

Usage on Owens

Set-up

To configure your enviorment for use of Salmon, use command module load salmon. This will load the default version.

Further Reading

Supercomputer: