On September 22nd OSC will be switching to Slurm for job scheduling and resource management on the Pitzer Cluster, along with the deployment of the new Pitzer hardware. We are in the process of updating the example job scripts for each software. If a Slurm example is not yet available, please consult our general Slurm information page or contact OSC help.

Salmon

Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.

Availability and Restrictions

Versions

Salmon is available on the Owens Cluster. The versions currently available at OSC are:

Version Owens
0.8.2

X*

1.0.0

X

* Current default version

You can use module spider salmonto view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

Salmon is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

Patro, R. et al., Freeware

Usage

Usage on Owens

Set-up

To configure your enviorment for use of Salmon, use command module load salmon. This will load the default version.

Further Reading

Supercomputer: