The XCP imaging pipeline (XCP system) is a free, open-source software package for processing of multimodal neuroimages. The XCP system uses a modular design to deploy analytic routines from leading MRI analysis platforms, including FSL, AFNI, and ANTs.
Availability and Restrictions
xcpEngine is available on Pitzer cluster. These are the versions currently available:
You can use
module spider xcpengine to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
xcpEngine is available to all OSC users.
Publisher/Vendor/Repository and License Type
xcpEngine is free and open source.
© Copyright 2019, Rastko Ciric, Adon F. G. Rosen, Guray Erus, Matthew Cieslak, Azeez Adebimpe, Philip A. Cook, Danielle S. Bassett, Christos Davatzikos, Daniel H. Wolf, Theodore D. Satterthwaite
Usage on Pitzer
To configure your environment for use of xcpEngine, run the following command:
module load xcpengine. The default version will be loaded. To select a particular version, use
module load xcpengine/version. For example, use
module load xcpengine/1.2.3 to load xcpEngine 1.2.3.
xcpEngine is installed in a singularity container.
XCPENGINE_IMG environment variable contains the container image file path. So, an example usage would be
module load xcpengine singularity run $XCPENGINE_IMG -h