On September 22nd, OSC switched to Slurm for job scheduling and resource management on the Pitzer Cluster, along with the deployment of the new Pitzer hardware. We are in the process of updating the example job scripts for each software. If a Slurm example is not yet available, please consult our general Slurm information page or contact OSC help.

metilene

metilene is a software tool to annotate differentally methylated regions and differentially methylated CpG sites.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Version Owens Pitzer
0.2-7 X* X*
* Current default version

You can use module spider metilene to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

metilene is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

Frank Jühling, Helene Kretzmer, Stephan H. Bernhart, Christian Otto, Peter F. Stadler & Steve Hoffmann, GNU GPL v2.0 license

Usage

Usage on Owens

Set-up

To configure your environment for use of metilene, run the following command: module load metilene. The default version will be loaded. To select a particular metileneversion, use module load metilene/version. For example, use module load metilene/0.2-7 to load metilene 0.2-7.

Usage on Pitzer

Set-up

To configure your environment for use of metilene, run the following command: module load metilene. The default version will be loaded. To select a particular metileneversion, use module load metilene/version. For example, use module load metilene/0.2-7 to load metilene 0.2-7.

Further Reading

Supercomputer: 
Service: 
Fields of Science: