On September 22nd, OSC switched to Slurm for job scheduling and resource management on the Pitzer Cluster, along with the deployment of the new Pitzer hardware. We are in the process of updating the example job scripts for each software. If a Slurm example is not yet available, please consult our general Slurm information page or contact OSC help.

Clustal W

Clustal W is a multiple sequence alignment program written in C++.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Version Owens Pitzer
2.1 X* X*
* Current default version

You can use module spider clustalw to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

Clustal W is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

GNU Lesser GPL.

Usage

Usage on Owens

Set-up

To configure your environment for use of metilene, run the following command: module load clustalw. The default version will be loaded. To select a particular MUSCLE version, use module load clustalw/version. For example, use module load clustalw/2.1 to load Clustal W 2.1.

Usage on Pitzer

Set-up

To configure your environment for use of metilene, run the following command: module load clustalw. The default version will be loaded. To select a particular MUSCLE version, use module load clustalw/version. For example, use module load clustalw/2.1 to load Clustal W 2.1.

Further Reading

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