On September 22nd, OSC switched to Slurm for job scheduling and resource management on the Pitzer Cluster, along with the deployment of the new Pitzer hardware. We are in the process of updating the example job scripts for each software. If a Slurm example is not yet available, please consult our general Slurm information page or contact OSC help.

MUSCLE

MUSCLE is a program for creating multiple alignments of protein sequences.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Version Owens Pitzer
3.8.31 X* X*
* Current default version

You can use module spider muscle to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

MUSCLE is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

Public domain software.

Usage

Usage on Owens

Set-up

To configure your environment for use of metilene, run the following command: module load muscle. The default version will be loaded. To select a particular MUSCLE version, use module load muscle/version. For example, use module load muscle/3.8.31 to load MUSCLE 3.8.31.

Usage on Pitzer

Set-up

To configure your environment for use of metilene, run the following command: module load muscle. The default version will be loaded. To select a particular MUSCLE version, use module load muscle/version. For example, use module load muscle/3.8.31 to load MUSCLE 3.8.31.

Further Reading

Supercomputer: 
Service: 
Fields of Science: