MUSCLE

MUSCLE is a program for creating multiple alignments of protein sequences.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Version Owens Pitzer
3.8.31 X* X*
* Current default version

You can use module spider muscle to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

MUSCLE is available to all OSC users without restriction.

Publisher/Vendor/Repository and License Type

Public domain software.

Usage

Usage on Owens

Set-up

To configure your environment for use of metilene, run the following command: module load muscle. The default version will be loaded. To select a particular MUSCLE version, use module load muscle/version. For example, use module load muscle/3.8.31 to load MUSCLE 3.8.31.

Usage on Pitzer

Set-up

To configure your environment for use of metilene, run the following command: module load muscle. The default version will be loaded. To select a particular MUSCLE version, use module load muscle/version. For example, use module load muscle/3.8.31 to load MUSCLE 3.8.31.

Further Reading

Supercomputer: 
Service: 
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